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libGenome Compound List

Here are the classes, structs, unions and interfaces with brief descriptions:
  • ExMem
  • gnABISource (GnABISource is not implemented)
  • gnBaseFeature (Features of DNA sequences can be accessed and manipulated using classes derived from gnBaseFeature)
  • gnBaseFilter
  • gnBaseHeader (This class provides a general interface to sequence related headers)
  • gnBaseQualifier (GnBaseQualifier is a general interface to sequence qualifiers)
  • gnBaseSource (GnBaseSource defines a standard interface for derived classes to provide access to file, database, and network sources of genetic data)
  • gnBaseSpec (GnBaseSpec is the class which stores genetic information and is best accessed using gnSequence)
  • gnClone
  • gnCompare
  • gnContigSpec (GnContigSpec is an interface for classes which store contigs, or reads, of DNA or protein sequence)
  • gnDataBaseSource (Not yet implemented)
  • gnDNASequence (GnDNASequence is a special kind of gnSequence which can be used for DNA sequences It sets the default filters and comparators to the DNA filters and comparators)
  • gnDNXSource (GnDNXSource implements the DNX file source)
  • gnException
  • gnExceptionCode
  • gnFASSource (GnFASSource reads and writes FastA files)
  • gnFastTranslator
  • gnFeature (GnFeature stores sequence features in memory)
  • gnFileContig (GnFileContig is used by source classes to track the location of sequence data on disk)
  • gnFileSource (GnFileSource is a standard interface to all file based sources of genetic information)
  • gnFilter
  • gnFragmentSpec (GnFragmentSpec contains a list of specs which make up a sequence fragment)
  • gnGBKSource (GnGBKSource is a GenBank sequence file reader)
  • gnGenomeSpec (This class contains references to the sequence data, annotation, and other related header data for an organism's genome)
  • gnLocation (This class is used to store sequence locations)
  • gnMultiSpec (This class defines an interface for specs which have multiple subspecs containing sequence data)
  • gnProteinSequence (GnProteinSequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators)
  • gnRAWSource (GnRAWSource reads raw sequence data from a text file)
  • gnRNASequence (GnRNASequence is a special kind of gnSequence which can be used for RNA sequences It sets the default filters and comparators to the RNA filters and comparators)
  • gnSEQSource (GnSEQSource is a SEQ file reader)
  • gnSequence (GnSequence is the most commonly used class in libGenome)
  • gnSourceFactory (GnSourceFactory is the middle man when acessing a sequence data source It tracks all data sources currently in use, ensuring that a particular data source is only opened and parsed once)
  • gnSourceHeader (GnSourceHeader is used to store a sequence header which resides in another source)
  • gnSourceQualifier (GnSourceQualifier is used to store a sequence qualifier which resides in another source)
  • gnSourceSpec (GnSourceSpec stores sequence and annotation data from another source)
  • gnStringHeader (GnStringHeader stores sequence related header information in memory)
  • gnStringQualifier (GnStringQualifier stores a sequence qualifier in memory)
  • gnStringSpec (GnStringSpec stores a sequence and annotation data in memory)
  • gnTranslator (Facilitates the translation of ambiguous DNA and RNA sequences to protein sequence)

Generated at Fri Nov 30 15:36:53 2001 for libGenome by doxygen1.2.8.1 written by Dimitri van Heesch, © 1997-2001